Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs13275627 chr8:6187114 T/C 2.15E-5 500 21.85 24.05 7.72 KM Plot
LGG rs13277988 chr8:6188112 A/G 1.73E-5 507 21.83 24.28 7.72 KM Plot
LGG rs13279639 chr8:143435125 C/A 2.09E-6 497 23.63 20.23 3.7 KM Plot
LGG rs13377166 chr10:886259 G/A 3.47E-7 506 21.77 24.5 14.43 KM Plot
LGG rs13392890 chr2:10517308 C/T 1.08E-6 502 23.53 21.7 5.2 KM Plot
LGG rs1341741 chr10:888073 A/G 2.5E-6 502 21.83 24.23 14.47 KM Plot
LGG rs1341742 chr10:888240 T/C 3.53E-7 505 21.7 24.5 14.43 KM Plot
LGG rs137885485 chr6:53163175 AACTT/A 1.59E-5 508 22.67 21.6 14.8 KM Plot
LGG rs138060996 chr10:95481955 AT/A 6.6E-5 498 21.85 24.27 20.82 KM Plot
LGG rs138170159 chr14:24420456 GTTATTTATTTAT/G 4.48E-5 506 23.63 21.15 15.53 KM Plot
LGG rs138175485 chr16:8710756 AAAAT/A 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs138175939 chr3:194784930 CTAAG/C 4.25E-6 502 21.35 26.03 5.17 KM Plot
LGG rs138235631 chr8:6176383 C/T 1.86E-5 506 22.37 23.8 7.72 KM Plot
LGG rs138340397 chr1:204166554 AG/A 8.37E-6 499 22.67 21 7.18 KM Plot
LGG rs138496 chr22:47010548 G/A 0 494 3.7 19.03 21.85 KM Plot